Table 1.
Distribution of the orthology classes into DNA maintenance network in DNAtraffic database
General name of super-pathway | Name of process | Number of orthology class |
---|---|---|
Genome dynamics | Chromatin remodeling | 72 |
Histones | 5 | |
Histone modifications | 75 | |
Transcription | 34 | |
Transcription factors | 35 | |
Heterochromatin formation | 27 | |
Telomere maintenance | 23 | |
Prokaryotic nucleoid remodeling | 12 | |
DNA synthesis | DNA replication | 67 |
TLS | 13 | |
Rad6 pathway | 5 | |
DNA repair | Direct repair | |
Direct reversal | 8 | |
Single-strand breaks repair | ||
Base excision repair | 39 | |
Nucleotide excision repair | 47 | |
Mismatch repair | 42 | |
Very short patch repair | 1 | |
Double-strand breaks repair | ||
Homologous recombination | 56 | |
FA pathway | 58 | |
NHEJ | 17 | |
Damage checkpoint | DDR | 23 |
Prokaryotic SOS response | 18 | |
Nucleotide level | Modulation of nucleotide pools | 6 |