Table 1.
Distribution of the orthology classes into DNA maintenance network in DNAtraffic database
| General name of super-pathway | Name of process | Number of orthology class |
|---|---|---|
| Genome dynamics | Chromatin remodeling | 72 |
| Histones | 5 | |
| Histone modifications | 75 | |
| Transcription | 34 | |
| Transcription factors | 35 | |
| Heterochromatin formation | 27 | |
| Telomere maintenance | 23 | |
| Prokaryotic nucleoid remodeling | 12 | |
| DNA synthesis | DNA replication | 67 |
| TLS | 13 | |
| Rad6 pathway | 5 | |
| DNA repair | Direct repair | |
| Direct reversal | 8 | |
| Single-strand breaks repair | ||
| Base excision repair | 39 | |
| Nucleotide excision repair | 47 | |
| Mismatch repair | 42 | |
| Very short patch repair | 1 | |
| Double-strand breaks repair | ||
| Homologous recombination | 56 | |
| FA pathway | 58 | |
| NHEJ | 17 | |
| Damage checkpoint | DDR | 23 |
| Prokaryotic SOS response | 18 | |
| Nucleotide level | Modulation of nucleotide pools | 6 |
