Items where Author is "Grynberg, Marcin"

Article

Płonka, Dawid and Wiśniewska, Marta and Ziemska-Legięcka, Joanna and Grynberg, Marcin and Bal, Wojciech (2023) The Cu(II) affinity constant and reactivity of Hepcidin-25, the main iron regulator in human blood. Journal of inorganic biochemistry, 248 . p. 112364. ISSN 1873-3344

Jarnot, Patryk and Ziemska-Legiecka, Joanna and Grynberg, Marcin and Gruca, Aleksandra (2022) Insights from analyses of low complexity regions with canonical methods for protein sequence comparison. Briefings in Bioinformatics, 23 (5). bbac299. ISSN 1467-5463

Podobas, Ewa Izabela and Gutowska-Owsiak, Danuta and Moretti, Sebastien and Poznański, Jarosław and Kulińczak, Mariusz and Grynberg, Marcin and Gruca, Aleksandra and Bonna, Arkadiusz and Płonka, Dawid and Frączyk, Tomasz and Ogg, Graham and Bal, Wojciech (2022) Ni2+-Assisted Hydrolysis May Affect the Human Proteome; Filaggrin Degradation Ex Vivo as an Example of Possible Consequences. Frontiers in Molecular Biosciences, 9 (828674). ISSN 2296-889X

Gruca, Aleksandra and Ziemska-Legiecka, Joanna and Jarnot, Patryk and Sarnowska, E.A. and Sarnowski, T.J. and Grynberg, Marcin (2021) Common low complexity regions for SARS-CoV-2 and human proteomes as potential multidirectional risk factor in vaccine development. BMC Bioinformatics, 22 (1). p. 182. ISSN 1471-2105

Gruca, Aleksandra and Grynberg, Marcin and Promponas, Vasilis J and Tosatto, Silvio C E and Piovesan, Damiano and Necci, Marco and Paladin, Lisanna and Dosztányi, Zsuzsanna and Hancock, John M and Andrade-Navarro, Miguel A and Mier, Pablo and Merski, Matthew and Dobson, Laszlo and Ziemska-Legiecka, Joanna and Jarnot, Patryk (2020) PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins. Nucleic Acids Research, 48 (W1). W77-W84. ISSN 0305-1048

Tørresen, Ole K and Star, Bastiaan and Mier, Pablo and Andrade-Navarro, Miguel A and Bateman, Alex and Jarnot, Patryk and Gruca, Aleksandra and Grynberg, Marcin and Kajava, Andrey V and Promponas, Vasilis J and Anisimova, Maria and Jakobsen, Kjetill S and Linke, Dirk (2019) Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases. Nucleic Acids Research, 47 (21). pp. 10994-11006. ISSN 0305-1048

Koryszewska-Bagińska, Anna and Gawor, Jan and Nowak, Adriana and Grynberg, Marcin and Aleksandrzak-Piekarczyk, Tamara (2019) Comparative genomics and functional analysis of a highly adhesive dairy Lactobacillus paracasei subsp. paracasei IBB3423 strain. Applied Microbiology and Biotechnology, 103 (18). pp. 7617-7634. ISSN 0175-7598

Mier, Pablo and Paladin, Lisanna and Tamana, Stella and Petrosian, Sophia and Hajdu-Soltész, Borbála and Urbanek, Annika and Gruca, Aleksandra and Plewczynski, Dariusz and Grynberg, Marcin and Bernadó, Pau and Gáspári, Zoltán and Ouzounis, Christos A and Promponas, Vasilis J and Kajava, Andrey V and Hancock, John M and Tosatto, Silvio C E and Dosztanyi, Zsuzsanna and Andrade-Navarro, Miguel A (2019) Disentangling the complexity of low complexity proteins. Briefings in Bioinformatics . ISSN 1467-5463

Piechocki, Marcin and Giska, Fabian and Koczyk, Grzegorz and Grynberg, Marcin and Krzymowska, Magdalena (2018) An Engineered Distant Homolog of Pseudomonas syringae TTSS Effector From Physcomitrella patens Can Act as a Bacterial Virulence Factor. Frontiers in Microbiology, 9 . p. 1060. ISSN 1664-302X

Poznański, Jarosław and Topiński, Jan and Muszewska, Anna and Dębski, Konrad J. and Hoffman-Sommer, Marta and Pawłowski, Krzysztof and Grynberg, Marcin (2018) Global pentapeptide statistics are far away from expected distributions. Scientific Reports, 8 (1). p. 15178. ISSN 2045-2322

Schoville, Sean D. and Chen, Yolanda H. and Andersson, Martin N. and Benoit, Joshua B. and Bhandari, Anita and Bowsher, Julia H. and Brevik, Kristian and Cappelle, Kaat and Chen, Mei-Ju M. and Childers, Anna K. and Childers, Christopher and Christiaens, Olivier and Clements, Justin and Didion, Elise M. and Elpidina, Elena N. and Engsontia, Patamarerk and Friedrich, Markus and García-Robles, Inmaculada and Gibbs, Richard A. and Goswami, Chandan and Grapputo, Alessandro and Gruden, Kristina and Grynberg, Marcin and Henrissat, B. and Jennings, Emily C. and Jones, Jeffery W. and Kalsi, Megha and Khan, Sher A. and Kumar, Abhishek and Li, Fei and Lombard, Vincent and Ma, Xingzhou and Martynov, Alexander and Miller, Nicholas J. and Mitchell, Robert F. and Munoz-Torres, Monica and Muszewska, Anna and Oppert, Brenda and Palli, Subba Reddy and Panfilio, Kristen A. and Pauchet, Yannick and Perkin, Lindsey C. and Petek, Marko and Poelchau, Monica F. and Record, Éric and Rinehart, Joseph P. and Robertson, Hugh M. and Rosendale, Andrew J. and Ruiz-Arroyo, Victor M. and Smagghe, Guy and Szendrei, Zsofia and Thomas, Gregg W.C. and Torson, Alex S. and Vargas Jentzsch, Iris M. and Weirauch, Matthew T. and Yates, Ashley D. and Yocum, George D. and Yoon, June-Sun and Richards, Stephen (2018) A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). Scientific Reports, 8 (1). ISSN 2045-2322

Rzepnikowska, Weronika and Flis, Krzysztof and Kaminska, Joanna and Grynberg, Marcin and Urbanek, Agnieszka and Ayscough, Kathryn and Zoladek, Teresa (2017) Amino acid substitution equivalent to human chorea-acanthocytosis I2771R in yeast Vps13 protein affects its binding to phosphatidylinositol 3-phosphate. Human Molecular Genetics, 26 (8). pp. 1497-1510. ISSN 0964-6906

Kaminska, Joanna and Rzepnikowska, Weronika and Polak, Anna and Flis, Krzysztof and Soczewka, Piotr and Bala, Katarzyna and Sieńko, Marzena and Grynberg, Marcin and Kaliszewski, Pawel and Urbanek, Agnieszka and Ayscough, Kathryn and Zoladek, Teresa (2016) Phosphatidylinositol-3-phosphate regulates response of cells to proteotoxic stress. The International Journal of Biochemistry & Cell Biology, 79 . pp. 494-504. ISSN 1357-2725 (In Press)

Nguyen, Kim and Sreelatha, Anju and Durrant, Eric and Lopez-Garrido, Javier and Muszewska, Anna and Dudkiewicz, Małgorzata and Grynberg, Marcin and Yee, Samantha and Pogliano, Kit and Tomchick, Diana and Pawłowski, Krzysztof and Dixon, Jack and Tagliabracci, Vincent (2016) Phosphorylation of spore coat proteins by a family of atypical protein kinases. Proc Natl Acad Sci U S A, 113 (25). E3482-E3491.

Kanto, Satoru and Grynberg, Marcin and Kaneko, Yoshiyuki and Fujita, Jun and Satake, Masanobu (2016) A variant of Runx2 that differs from the bone isoform in its splicing is expressed in spermatogenic cells. PeerJ (4). e1862.

Aleksandrzak-Piekarczyk, Tamara and Koryszewska-Bagińska, Anna and Grynberg, Marcin and Nowak, Adriana and Cukrowska, Bozena and Kozakova, Hana and Bardowski, Jacek K. (2016) Genomic and Functional Characterization of the Unusual pLOCK 0919 Plasmid Harboring the spaCBA Pili Cluster in Lactobacillus casei LOCK 0919. Genome Biology and Evolution, 8 (1). pp. 202-217. ISSN 1759-6653

Kowalec, Piotr and Grynberg, Marcin and Pająk, Beata and Socha, Anna and Winiarska, Katarzyna and Fronk, Jan and Kurlandzka, Anna (2015) Newly identified protein Imi1 affects mitochondrial integrity and glutathione homeostasis in Saccharomyces cerevisiae. FEMS Yeast Research . ISSN 1567-1364 (In Press)

Perlińska, Agata and Grynberg, Marcin (2014) Bacillus anthracis pXO1 plasmid encodes a putative membrane-bound bacteriocin. PeerJ . e679.

Lenart, Anna and Dudkiewicz, Małgorzata and Grynberg, Marcin and Pawłowski, Krzysztof (2013) CLCAs - a family of metalloproteases of intriguing phylogenetic distribution and with cases of substituted catalytic sites. PloS one, 8 (5). e62272. ISSN 1932-6203

Szczesny, Pawel and Mykowiecka, Agnieszka and Pawłowski, Krzysztof and Grynberg, Marcin (2013) Distinct protein classes in human red cell proteome revealed by similarity of phylogenetic profiles. PloS one, 8 (1). e54471. ISSN 1932-6203

Moran, Yehu and Fredman, David and Szczesny, Pawel and Grynberg, Marcin and Technau, Ulrich (2012) Recurrent horizontal transfer of bacterial toxin genes to eukaryotes. Molecular Biology and Evolution, 29 (9). pp. 2223-2230.

Mielecki, Damian and Zugaj, Dorota Łucja and Muszewska, Anna and Piwowarski, Jan and Chojnacka, Aleksandra and Mielecki, Marcin and Nieminuszczy, Jadwiga and Grynberg, Marcin and Grzesiuk, Elzbieta (2012) Novel AlkB Dioxygenases – Alternative Models for In Silico and In Vivo Studies. PloS one, 7 (1). e30588. ISSN 1932-6203

Dudkiewicz, Małgorzata and Szczepińska, Teresa and Grynberg, Marcin and Pawłowski, Krzysztof (2012) A novel protein kinase-like domain in a selenoprotein, widespread in the tree of life. PloS one, 7 (2). e32138. ISSN 1932-6203

Romanyuk, Daria and Polak, Anna and Maleszewska, Agnieszka and Sieńko, Marzena and Grynberg, Marcin and Zoladek, Teresa (2011) Human hAtg2A protein expressed in yeast is recruited to preautophagosomal structure but does not complement autophagy defects of atg2delta strain. Acta Biochimica Polonica, 58 (3). pp. 365-374.

Górecki, Roman Krzysztof and Koryszewska-Bagińska, Anna and Gołębiewski, Marcin and Żylińska, Joanna and Grynberg, Marcin and Bardowski, Jacek K. (2011) Adaptative Potential of the Lactococcus Lactis IL594 Strain Encoded in Its 7 Plasmids. PloS one, 6 (7). ISSN 1932-6203

Szczesny, Pawel and Lacovache, Ioan and Muszewska, Anna and Ginalski, Krzysztof and van der Goot, F Gisou and Grynberg, Marcin (2011) Extending the aerolysin family: from bacteria to vertebrates. PloS one, 6 (6). e20349. ISSN 1932-6203

Kurowska, Ewa and Sasin-Kurowska, Joanna and Bonna, Arkadiusz and Grynberg, Marcin and Poznański, Jarosław and Knizewski, Lukasz and Ginalski, Krzysztof and Bal, Wojciech (2011) The C2H2 zinc finger transcription factors are likely targets for Ni(ii) toxicity. Metallomics : integrated biometal science, 3 (11). pp. 1227-31. ISSN 1756-591X

Desjardins, Christopher A and Champion, Mia D and Holder, Jason W and Muszewska, Anna and Goldberg, Jonathan and Bailão, Alexandre M and Brigido, Marcelo Macedo and Ferreira, Márcia Eliana da Silva and Garcia, Ana Maria and Grynberg, Marcin and Gujja, Sharvari and Heiman, David I and Henn, Matthew R and Kodira, Chinnappa D and León-Narváez, Henry and Longo, Larissa V G and Ma, Li-Jun and Malavazi, Iran and Matsuo, Alisson L and Morais, Flavia V and Pereira, Maristela and Rodríguez-Brito, Sabrina and Sakthikumar, Sharadha and Salem-Izacc, Silvia M and Sykes, Sean M and Teixeira, M.M. and Vallejo, Milene C and Walter, Maria Emília Machado Telles and Yandava, Chandri and Young, Sarah and Zeng, Qiandong and Zucker, Jeremy and Felipe, Maria Sueli and Goldman, Gustavo H and Haas, Brian J and McEwen, Juan G and Nino-Vega, Gustavo and Puccia, Rosana and San-Blas, Gioconda and Soares, Celia Maria de Almeida and Birren, Bruce W and Cuomo, Christina A (2011) Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis. PLoS genetics, 7 (10). e1002345. ISSN 1553-7404

Muszewska, Anna and Taylor, John W. and Szczesny, Pawel and Grynberg, Marcin (2011) Independent Subtilases Expansions in Fungi Associated with Animals. Molecular Biology and Evolution .

Muszewska, Anna and Hoffman-Sommer, Marta and Grynberg, Marcin (2011) LTR retrotransposons in fungi. PloS one, 6 (12). e29425. ISSN 1932-6203

Stranzl, Gudrun R and Santelli, Eugenio and Bankston, Laurie A and La Clair, Chandra and Bobkov, Andrey and Schwarzenbacher, Robert and Godzik, Adam and Perego, Marta and Grynberg, Marcin and Liddington, Robert C (2011) Structural insights into inhibition of Bacillus anthracis sporulation by a novel class of non-heme globin sensor domains. The Journal of biological chemistry, 286 (10). pp. 8448-58. ISSN 1083-351X

Pawłowski, Krzysztof and Muszewska, Anna and Lenart, Anna and Szczepińska, Teresa and Godzik, Adam and Grynberg, Marcin (2010) A widespread peroxiredoxin-like domain present in tumor suppression- and progression-implicated proteins. BMC genomics, 11 . p. 590. ISSN 1471-2164

Olejnik, Kamil and Plochocka, Danuta and Grynberg, Marcin and Goch, Grażyna and Gruszecki, Wiesław I and Basińska, Teresa and Kraszewska, Elzbieta (2009) Mutational analysis of the AtNUDT7 Nudix hydrolase from Arabidopsis thaliana reveals residues required for protein quaternary structure formation and activity. Acta biochimica Polonica, 56 (2). pp. 291-300. ISSN 1734-154X

Karkusiewicz, Iwona and Rempola, Bozenna and Gromadka, Robert and Grynberg, Marcin and Rytka, Joanna (2004) Functional and physical interactions of Faf1p, a Saccharomyces cerevisiae nucleolar protein. Biochemical and biophysical research communications, 319 (2). pp. 349-57. ISSN 0006-291X