Items where Author is "Dziembowski, Andrzej"

Article

Turtola, Matti Ari and Manav, Cemre and Kumar, Ananthanarayanan and Tudek, Agnieszka and Mroczek, Seweryn and Krawczyk, Pawel S and Dziembowski, Andrzej and Schmid, Manfred and Passmore, Lori and Casañal, Ana and Jensen, Torben H. (2021) Three-layered control of mRNA poly(A) tail synthesis in Saccharomyces cerevisiae. Genes and Development .

Tudek, Agnieszka and Krawczyk, Pawel S and Mroczek, Seweryn and Tomecki, Rafał and Turtola, Matti Ari and Matylla-Kulińska, Katarzyna and Jensen, Torben H. and Dziembowski, Andrzej (2021) Global view on the metabolism of RNA poly(A) tails in yeast Saccharomyces cerevisiae. Nature Communications, 12 . ISSN 2041-1723

Kotrys, Anna V. and Cysewski, Dominik and Czarnomska, Sylwia and Pietras, Zbigniew and Borowski, Lukasz S and Dziembowski, Andrzej and Szczęsny, Roman J. (2019) Quantitative proteomics revealed C6orf203/MTRES1 as a factor preventing stress-induced transcription deficiency in human mitochondria. Nucleic Acids Research,, 47 (14). pp. 7502-7517. ISSN 0305-1048

Warkocki, Zbigniew and Krawczyk, Pawel S and Adamska, Dorota and Bijata, Krystian and Garcia-Perez, Jose L and Dziembowski, Andrzej (2018) Uridylation by TUT4/7 Restricts Retrotransposition of Human LINE-1s. Cell . ISSN 0092-8674

Furmanczyk, Ewa and Lipinski, Leszek and Dziembowski, Andrzej and Sobczak, Adam (2018) Genomic and Functional Characterization of Environmental Strains of SDS-Degrading Pseudomonas spp., Providing a Source of New Sulfatases. Frontiers in Microbiology, 9 . p. 1795. ISSN 1664-302X

Szczęsny, Roman J. and Kowalska, Katarzyna and Kłosowska-Kosicka, Kamila and Chlebowski, Aleksander and Owczarek, Ewelina P. and Warkocki, Zbigniew and Kuliński, Tomasz M. and Adamska, Dorota and Affek, Kamila and Jędroszkowiak, Agata and Kotrys, Anna V. and Tomecki, Rafał and Krawczyk, Pawel S and Borowski, Lukasz S and Dziembowski, Andrzej (2018) Versatile approach for functional analysis of human proteins and efficient stable cell line generation using FLP-mediated recombination system. PLOS ONE, 13 (3). e0194887. ISSN 1932-6203

Krawczyk, Pawel S and Lipinski, Leszek and Dziembowski, Andrzej (2018) PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures. Nucleic acids research . ISSN 1362-4962

Razew, Michal and Warkocki, Zbigniew and Taube, Michał and Kolondra, Adam and Czarnocki-Cieciura, Mariusz and Nowak, Elzbieta and Labedzka-Dmoch, Karolina and Kawinska, Aleksandra and Piatkowski, Jakub and Golik, Paweł and Kozak, Maciej and Dziembowski, Andrzej and Nowotny, Marcin (2018) Structural analysis of mtEXO mitochondrial RNA degradosome reveals tight coupling of nuclease and helicase components. Nature Communications, 9 (97). ISSN 2041-1723

Pyzik, Adam and Ciezkowska, Martyna and Krawczyk, Pawel S and Sobczak, Adam and Drewniak, Lukasz and Dziembowski, Andrzej and Lipinski, Leszek (2018) Comparative analysis of deep sequenced methanogenic communities: identification of microorganisms responsible for methane production. Microbial Cell Factories, 17 (1). ISSN 1475-2859

Wycisk, Krzysztof and Tarczewska, Aneta and Kaus-Drobek, Magdalena and Dadlez, Michal and Hołubowicz, Rafał and Pietras, Zbigniew and Dziembowski, Andrzej and Taube, Michał and Kozak, Maciej and Orłowski, Marek and Ożyhar, Andrzej (2018) Intrinsically disordered N-terminal domain of the Helicoverpa armigera Ultraspiracle stabilizes the dimeric form via a scorpion-like structure. The Journal of Steroid Biochemistry and Molecular Biology, 183 . pp. 167-183. ISSN 09600760

Furmanczyk, Ewa and Kaminski, Michal and Spolnik, Grzegorz and Sojka, Maciej and Danikiewicz, Witold and Dziembowski, Andrzej and Lipinski, Leszek and Sobczak, Adam (2017) Isolation and Characterization of Pseudomonas spp. Strains That Efficiently Decompose Sodium Dodecyl Sulfate. Frontiers in Microbiology, 8 . p. 1872. ISSN 1664-302X

Kaminski, Michal A. and Furmanczyk, Ewa and Sobczak, Adam and Dziembowski, Andrzej and Lipinski, Leszek (2017) Pseudomonas silesiensis sp. nov. strain A3 T isolated from a biological pesticide sewage treatment plant and analysis of the complete genome sequence. Systematic and Applied Microbiology . ISSN 07232020

Furmanczyk, Ewa and Kaminski, Michal and Dziembowski, Andrzej and Lipinski, Leszek and Sobczak, Adam (2017) Draft Genome Sequence of the Type Strain Pseudomonas jessenii DSM 17150. Genome Announcements, 5 (39). e01035-17. ISSN 2169-8287

Furmanczyk, Ewa and Kaminski, Michal and Dziembowski, Andrzej and Lipinski, Leszek and Sobczak, Adam (2017) Draft Genome Sequence of the Type Strain Pseudomonas umsongensis DSM 16611. Genome Announcements, 5 (39). e01038-17. ISSN 2169-8287

Kaminski, Michal A. and Furmanczyk, Ewa and Dziembowski, Andrzej and Sobczak, Adam and Lipinski, Leszek (2017) Draft Genome Sequence of the Type Strain Sphingopyxis witflariensis DSM 14551. Genome Announcements, 5 (36). e00924-17. ISSN 2169-8287

Kaminski, Michal A. and Furmanczyk, Ewa and Dziembowski, Andrzej and Sobczak, Adam and Lipinski, Leszek (2017) Draft Genome Sequence of the Type Strain Sphingopyxis bauzanensis DSM 22271. Genome Announcements, 5 (37). e01014-17. ISSN 2169-8287

Rawa, Katarzyna and Szczęsny, Roman J. and Owczarek, Ewelina P. and Adamowicz-Salach, Anna and Klukowska, Anna and Demkow, Urszula and Plochocka, Danuta and Szczesny, Pawel and Gora, Monika and Dziembowski, Andrzej and Burzynska, Beata (2017) Two novel C-terminal frameshift mutations in the β-globin gene lead to rapid mRNA decay. BMC Medical Genetics, 18 (1). p. 65. ISSN 1471-2350

Kalisiak, Katarzyna and Kuliński, Tomasz M. and Tomecki, Rafał and Cysewski, Dominik and Pietras, Zbigniew and Chlebowski, Aleksander and Kowalska, Katarzyna and Dziembowski, Andrzej (2016) A short splicing isoform of HBS1L links the cytoplasmic exosome and SKI complexes in humans. Nucleic Acids Research (NAR) . ISSN 0305-1048

Jarrett, Rachael and Salio, Mariolina and Lloyd-Lavery, Antonia and Subramaniam, Sumithra and Bourgeois, Elvire and Archer, Charles and Cheung, Ka Lun and Hardman, Clare and Chandler, David and Salimi, Mariam and Gutowska-Owsiak, Danuta and Bernardino de la Serna, Jorge and Fallon, Padraic G and Jolin, Helen and Mckenzie, Andrew and Podobas, Ewa Izabela and Dziembowski, Andrzej and Bal, Wojciech and Johnson, David and Moody, D Branch and Cerundolo, Vincenzo and Ogg, Graham (2016) Filaggrin inhibits generation of CD1a neolipid antigens by house dust mite-derived phospholipase. Science Translational Medicine, 8 (325). pp. 1-12. ISSN 1946-6242

Łabno, Anna and Tomecki, Rafał and Dziembowski, Andrzej (2016) Cytoplasmic RNA decay pathways - enzymes and mechanisms. Biochimica et Biophysica Acta - Molecular Cell Research, 1863 (12). pp. 3125-3147.

Łabno, Anna and Warkocki, Zbigniew and Kuliński, Tomasz M. and Krawczyk, Paweł and Bijata, Krystian and Tomecki, Rafał and Dziembowski, Andrzej (2016) Perlman syndrome nuclease DIS3L2 controls cytoplasmic non-coding RNAs and provides surveillance pathway for maturing snRNAs. Nucleic acids research, 44 (21). pp. 10437-10453. ISSN 1362-4962

Wrobel, Lidia and Topf, Ulrike and Bragoszewski, Piotr and Wiese, Sebastian and Sztolsztener, Malgorzata E and Oeljeklaus, Silke and Varabyova, Aksana and Lirski, Maciej and Chroscicki, Piotr and Mroczek, Seweryn and Januszewicz, Elzbieta and Dziembowski, Andrzej and Koblowska, Marta and Warscheid, Bettina and Chacinska, Agnieszka (2015) Mistargeted mitochondrial proteins activate a proteostatic response in the cytosol. Nature, 524 (7566). pp. 485-8. ISSN 1476-4687

Cieśla, Małgorzata and Makała, Ewa and Płonka, Marta and Bazan, Rafał and Gewartowski, Kamil and Dziembowski, Andrzej and Boguta, Magdalena (2015) Rbs1, a new protein implicated in RNA polymerase III biogenesis in yeast Saccharomyces cerevisiae. Molecular and cellular biology, 35 (7). pp. 1169-81. ISSN 1098-5549

Siwaszek, A and Ukleja, M and Dziembowski, Andrzej (2014) Proteins involved in the degradation of cytoplasmic mRNA in the major eukaryotic model systems. RNA Biology . ISSN 1099-0123 (In Press)

Nicholls, TJ and Zsurka, G and Peeva, V and Scholer, S and Szczęsny, Roman J. and Cysewski, Dominik and Reyes, A and Kornblum, C and Sciacco, M and Moggio, M and Dziembowski, Andrzej and Kunz, WS and Minczuk, M (2014) Linear mtDNA fragments and unusual mtDNA rearrangements associated with pathological deficiency of MGME1 exonuclease. Human Molecular Genetics, 23 (23). pp. 6147-6162.

Szczepińska, Teresa and Kutner, Jan and Kopczyński, Michał and Pawłowski, Krzysztof and Dziembowski, Andrzej and Kudlicki, Andrzej and Ginalski, Krzysztof and Rowicka, Magda (2014) Probabilistic approach to predicting substrate specificity of methyltransferases. PLoS computational biology, 10 (3). e1003514. ISSN 1553-7358

Plocinski, Przemyslaw and Laubitz, Daniel and Cysewski, Dominik and Stodus, Krystian and Kowalska, Katarzyna and Dziembowski, Andrzej (2014) Identification of protein partners in Mycobacteria using a single step affinity purification method. PlosOne, 9 (3). e91380.

Tomecki, Rafał and Drążkowska, Karolina and Kucinski, Iwo and Stodus, Krystian and Szczęsny, Roman J. and Gruchota, Jakub and Owczarek, Ewelina Patrycja and Kalisiak, Katarzyna and Dziembowski, Andrzej (2014) Multiple myeloma-associated hDIS3 mutations cause perturbations in cellular RNA metabolism and suggest hDIS3 PIN domain as a potential drug target. Nucleic acids research, 42 (2). pp. 1270-1290. ISSN 1362-4962

Szczęsny, Roman J. and Hejnowicz, Monika S and Steczkiewicz, Kamil and Muszewska, Anna and Borowski, Lukasz S and Ginalski, Krzysztof and Dziembowski, Andrzej (2013) Identification of a novel human mitochondrial endo-/exonuclease Ddk1/c20orf72 necessary for maintenance of proper 7S DNA levels. Nucleic acids research . ISSN 1362-4962

Borowski, Lukasz S and Dziembowski, Andrzej and Hejnowicz, Monika S and Stępień, Piotr P. and Szczęsny, Roman J. (2013) Human mitochondrial RNA decay mediated by PNPase-hSuv3 complex takes place in distinct foci. Nucleic acids research, 41 (2). pp. 1223-40. ISSN 1362-4962

Drążkowska, Karolina and Tomecki, Rafał and Stodus, Krystian and Kowalska, Katarzyna and Czarnocki-Cieciura, Mariusz and Dziembowski, Andrzej (2013) The RNA exosome complex central channel controls both exonuclease and endonuclease Dis3 activities in vivo and in vitro. Nucleic acids research, 41 (6). pp. 3845-58. ISSN 1362-4962

Mroczek, Seweryn and Krwawicz, Joanna and Kutner, Jan and Lazniewski, Michal and Kucinski, Iwo and Ginalski, Krzysztof and Dziembowski, Andrzej (2012) C16orf57, a gene mutated in poikiloderma with neutropenia, encodes a putative phosphodiesterase responsible for the U6 snRNA 3′ end modification. Genes & Development, 26 (17). pp. 1911-1925.

Pena, Alvaro and Gewartowski, Kamil and Mroczek, Seweryn and Cuellar, Jorge and Szykowska, Aleksandra and Prokop, Andrzej and Czarnocki-Cieciura, Mariusz and Piwowarski, Jan and Aguilera, Andres and Carrascosa, Jose and Valpuesta, Jose and Dziembowski, Andrzej (2012) Architecture and nucleic acids recognition mechanism of the THO complex, an mRNP assembly factor. EMBO JOURNAL, 31 (6). pp. 1605-1616.

Lubas, Michał and Kristiansen, Maiken S. and Christensen, Marienne S. and Domański, Michał and Falkenby, Lasse G. and Lykke-Andersen, Søren and Andersen, Jens S. and Dziembowski, Andrzej and Jensen, Torben H. (2011) Interaction Profiling Identifies the Human Nuclear Exosome Targeting Complex. Molecular Cell (43). pp. 624-637.

Wlodarski, Tomasz and Kutner, Jan and Towpik, Joanna and Knizewski, Lukasz and Rychlewski, Leszek and Kudlicki, Andrzej and Rowicka, Magda and Dziembowski, Andrzej and Ginalski, Krzysztof (2011) Comprehensive Structural and Substrate Specificity Classification of the Saccharomyces cerevisiae Methyltransferome. PloS One . ISSN 1932-6203

Malet, Hélène and Topf, Maya and Clare, Daniel K. and Ebert, Judith and Bonneau, Fabien and Basquin, Jerome and Drążkowska, Karolina and Tomecki, Rafał and Dziembowski, Andrzej and Conti, Elena and Saibil, Helen R. and Lorenzten, Esben (2010) RNA channelling by the eukaryotic exosome. EMBO Reports, 11 (12). pp. 936-942.

Tomecki, Rafał and Dziembowski, Andrzej (2010) Novel endoribonucleases as central players in various pathways of eukaryotic RNA metabolism. RNA, 16 (9). pp. 1692-1724.

Tomecki, Rafał and Kristiansen, Maiken S. and Lykke-Andersen, Søren and Chlebowski, Aleksander and Larsen, Katja M. and Szczęsny, Roman J. and Drążkowska, Karolina and Pastuła, Agnieszka and Andersen, Jens S. and Stępień, Piotr P. and Dziembowski, Andrzej and Jensen, Torben H. (2010) The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L. EMBO Journal, 29 (14). pp. 2342-2357.

Tomecki, Rafał and Drążkowska, Karolina and Dziembowski, Andrzej (2010) Mechanisms of RNA Degradation by the Eukaryotic Exosome. Chembiochem, 11 (7). pp. 938-945.

Brooks, MA and Gewartowski, Kamil and Mitsiki, E and Létoquart, J and Pache, RA and Billier, Y and Bertero, M and Corréa, M and Czarnocki-Cieciura, Mariusz and Dadlez, Michal and Henriot, V and Lazar, N and Delbos, L and Lebert, D and Piwowarski, Jan and Rochaix, P and Böttcher, B and Serrano, L and Séraphin, Bertrand and van Tilbeurgh, H and Aloy, P and Perrakis, A and Dziembowski, Andrzej (2010) Systematic bioinformatics and experimental validation of yeast complexes reduces the rate of attrition during structural investigations. STRUCTURE, 18 (9). pp. 1075-1082. ISSN X

Book Section

Tomecki, Rafał and Drążkowska, Karolina and Krawczyk, Antonina and Kowalska, Katarzyna and Dziembowski, Andrzej (2015) Purification of eukaryotic exoribonucleases following heterologous expression in bacteria and analysis of their biochemical properties by in vitro enzymatic assays. In: RNA Remodeling Proteins. Humana Press.

Chlebowski, Aleksander and Tomecki, Rafał and Gas López, Maria Eugenia and Séraphin, Bertrand and Dziembowski, Andrzej (2010) CATALYTIC PROPERTIES OF THE EUKARYOTIC EXOSOME. In: RNA exosome. Advances in Experimental Medicine and Biology (702). Landes Bioscience and Springer Science+Business Media. ISBN 978-1-4419-7840-0